Software
Software designed at the IDeA Lab consists of Linux-based tools for all phases of visualization and image analysis, and is freely available to the public. Please visit our Download page to access our software. This will take you through a brief agreement form and then display the available packages.
We frequently update the packages. Updates are listed in the UpdateLog and the date of the current version is displayed in the README file of each download directory. You are welcome to check back for recent updates and bug fixes. If you have any questions, please contact Evan Fletcher directly by email.
Descriptions of Packages
Click on these links to see descriptions of the software. To obtain the software, visit our Download page.
A set of utilities for manipulating images and managing file formats.
Slice-based
viewing and cleanup tools.
Automated skullstrip and alignment of slices if necessary.
Template-based MRI inhomogeneity correction for stripped brain images.
Used for longitudinal or cross-sectional studies.
This involves linear alignment of pairs of images and high-dimensional
warping of a template image onto subject images.
We have implemented the Brain Boundary Shift Integral algorithm and we
also use a fluid-flow jacobian algorithm for detecting tissue loss in longitudinal images
(this will be posted soon).
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